PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0020s0108.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 152aa    MW: 16575.8 Da    PI: 9.551
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0020s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17656154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         s y GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+++ +
  Kalax.0020s0108.1.p  6 SSYIGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDTAESAALAYDQAALASR 56
                         6799******.**********44465..**********************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-12657IPR001471AP2/ERF domain
CDDcd000185.92E-26664No hitNo description
SuperFamilySSF541711.57E-21666IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-28766IPR001471AP2/ERF domain
PROSITE profilePS5103221.272765IPR001471AP2/ERF domain
SMARTSM003805.7E-32771IPR001471AP2/ERF domain
PRINTSPR003679.3E-10819IPR001471AP2/ERF domain
PRINTSPR003679.3E-103147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
LGKEQSSYIG VRKRPWGKFA AEIRDSTRNG VRVWLGTFDT AESAALAYDQ AALASRGPMA  60
LLNFSEEVVR ESLRELRCTM EENGSPVLAL KKKHSKKKKR AARGAAVARR REKIGGGGGD  120
DDGEMRLSGR DHVLVLEDLG ADYLDELLSL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-24868666ATERF1
2gcc_A1e-24868666ATERF1
1gcc_A1e-24868363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764685.11e-50PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016437637.12e-50PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC87e-49ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLQ8GZE92e-49Q8GZE9_SOLLC; Ethylene responsive element binding protein
STRINGPGSC0003DMT4000266277e-49(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-25ethylene response factor 1